Detailed information of matrix profile UN0469.1

  1. Home
  2. Matrix > UN0469.1
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: Six1-2
Matrix ID: UN0469.1
Class: Homeo
Family: HD-SINE
Collection: UNVALIDATED
Taxon: Urochordates
Species: Ciona intestinalis
Data Type: SELEX
Validation:
Uniprot ID:  
Source: 31267468
Comment: No

Sequence logo

Frequency matrix

         
A [ 226 228 270 246 259 239 187 77 24 837 71 57 823 231 267 216 228 277 219 251 ]
C [ 198 190 198 192 243 224 235 41 26 25 22 826 50 220 180 173 186 221 314 237 ]
G [ 331 297 271 211 235 298 340 846 50 72 23 34 75 240 290 195 248 228 223 262 ]
T [ 245 285 261 351 263 239 238 35 900 66 884 83 53 309 262 416 338 274 244 250 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0469.1 UN0469 1 Six1-2 Ciona intestinalis
HD-SINE Homeo
UN0469.2 UN0469 2 Six1-2 Ciona intestinalis
HD-SINE Homeo
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: