Detailed information of matrix profile UN0454.1

  1. Home
  2. Matrix > UN0454.1
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: Mef2
Matrix ID: UN0454.1
Class: MADS
Family: Regulators
Collection: UNVALIDATED
Taxon: Urochordates
Species: Ciona intestinalis
Data Type: SELEX
Validation:
Uniprot ID: Q4H375  
Source: 31267468
Comment:

Sequence logo

Frequency matrix

         
A [ 271 256 253 260 272 250 227 40 54 763 866 882 112 193 146 178 211 429 325 272 ]
C [ 226 240 238 200 161 153 255 922 855 106 27 9 25 261 240 62 119 263 255 266 ]
G [ 242 236 222 278 276 199 165 18 36 72 23 8 23 221 430 655 405 110 147 185 ]
T [ 261 268 288 262 291 398 353 20 55 59 84 101 841 325 184 106 265 198 273 276 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0454.1 UN0454 1 Mef2 Ciona intestinalis
Regulators MADS
UN0454.2 UN0454 2 Mef2 Ciona intestinalis
Regulators MADS
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: