Detailed information of matrix profile UN0439.1

  1. Home
  2. Matrix > UN0439.1
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: AP2-b
Matrix ID: UN0439.1
Class: Basic
Family: AP-2
Collection: UNVALIDATED
Taxon: Urochordates
Species: Ciona intestinalis
Data Type: SELEX
Validation:
Uniprot ID:  
Source: 31267468
Comment: No

Sequence logo

Frequency matrix

         
A [ 228 247 244 281 186 151 52 4 10 66 88 127 25 33 127 273 353 256 259 221 ]
C [ 281 247 244 190 235 325 504 974 912 98 103 73 15 202 427 249 188 220 219 251 ]
G [ 259 250 216 226 237 345 388 12 18 88 753 782 955 722 329 256 211 221 282 275 ]
T [ 232 257 297 302 341 179 56 10 60 748 56 19 4 44 117 222 249 303 240 253 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0439.1 UN0439 1 AP2-b Ciona intestinalis
AP-2 Basic
UN0439.2 UN0439 2 AP2-b Ciona intestinalis
AP-2 Basic
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: