Detailed information of matrix profile UN0408.1

  1. Home
  2. Matrix > UN0408.1
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: REM21
Matrix ID: UN0408.1
Class: B3
Family: REM
Collection: UNVALIDATED
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation:
Uniprot ID: Q9FK61  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 245 415 313 0 1000 0 0 1000 1000 293 395 381 340 435 265 ]
C [ 163 150 177 0 0 0 7 0 0 122 259 190 163 143 102 ]
G [ 401 238 129 1000 0 0 993 0 0 361 177 204 279 211 327 ]
T [ 190 197 381 0 0 1000 0 0 0 224 170 224 218 211 306 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0408.1 UN0408 1 REM21 Arabidopsis thaliana
REM B3
UN0408.2 UN0408 2 REM21 Arabidopsis thaliana
REM B3
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: