Detailed information of matrix profile UN0407.1

  1. Home
  2. Matrix > UN0407.1
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: REM1
Matrix ID: UN0407.1
Class: B3
Family: REM
Collection: UNVALIDATED
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: PBM
Validation:
Uniprot ID: Q84J39  
Source: 24477691
Comment:

Sequence logo

Frequency matrix

         
A [ 129 0 0 1000 0 1000 400 103 429 ]
C [ 129 1000 0 0 1000 0 191 802 121 ]
G [ 324 0 0 0 0 0 0 95 121 ]
T [ 418 0 1000 0 0 0 409 0 329 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0407.1 UN0407 1 REM1 Arabidopsis thaliana
REM B3
UN0407.2 UN0407 2 REM1 Arabidopsis thaliana
REM B3
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: