Detailed information of matrix profile UN0400.1

  1. Home
  2. Matrix > UN0400.1
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: HMGB15
Matrix ID: UN0400.1
Class: ARID
Family:
Collection: UNVALIDATED
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation:
Uniprot ID: Q9MAT6  
Source: 27203113
Comment: No

Sequence logo

Frequency matrix

         
A [ 70 695 48 981 343 206 908 0 1000 273 641 130 10 225 102 254 ]
C [ 83 13 0 6 83 60 57 3 0 0 0 60 6 63 63 70 ]
G [ 35 0 0 6 79 41 22 0 0 0 229 787 0 19 54 105 ]
T [ 813 292 952 6 495 692 13 997 0 727 130 22 984 692 781 571 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0400.1 UN0400 1 HMGB15 Arabidopsis thaliana
ARID
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: