Detailed information of matrix profile UN0379.1

  1. Home
  2. Matrix > UN0379.1
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: S1FA3
Matrix ID: UN0379.1
Class: S1Fa-like
Family:
Collection: UNVALIDATED
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation:
Uniprot ID: Q93VI0  
Source: 27203113
Comment: No

Sequence logo

Frequency matrix

         
A [ 394 461 92 18 20 20 726 25 1927 1768 513 496 ]
C [ 365 627 69 15 1892 102 118 23 5 34 418 703 ]
G [ 759 379 19 4 30 16 1078 1915 9 81 573 371 ]
T [ 462 513 1800 1943 38 1842 58 17 39 97 476 410 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0379.1 UN0379 1 S1FA3 Arabidopsis thaliana
S1Fa-like
UN0379.2 UN0379 2 S1FA3 Arabidopsis thaliana
S1Fa-like
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: