Detailed information of matrix profile MA2019.1

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Profile summary
Name: HSFA1B
Matrix ID: MA2019.1
Class: Heat
Family: HSF
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 27493213
Uniprot ID: O81821  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 1882 3751 143 7329 7105 229 1002 174 120 73 1130 3083 ]
C [ 1541 990 122 101 77 401 1940 124 95 7327 1728 1029 ]
G [ 1204 1761 7300 108 133 6814 804 54 86 105 983 1746 ]
T [ 3033 1158 95 122 345 216 3914 7308 7359 155 3819 1802 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA2019.1 MA2019 1 HSFA1B Arabidopsis thaliana
HSF Heat
MA2019.2 MA2019 2 HSFA1B Arabidopsis thaliana
HSF Heat
     

-log(P-value) = 4274.88

TFFM details

TFFM ID: TFFM0978.1

ChIP-seq Centrality
-log(P-value): 11568.0

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0978.1

ChIP-seq Centrality
-log(P-value): 15034.4

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: