Detailed information of matrix profile MA2019.1

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Profile summary
Name: HSFA1B
Matrix ID: MA2019.1
Class: Heat
Family: HSF
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 27493213
Uniprot ID: O81821  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 1802 3819 155 7359 7308 3914 216 345 122 95 1158 3033 ]
C [ 1746 983 105 86 54 804 6814 133 108 7300 1761 1204 ]
G [ 1029 1728 7327 95 124 1940 401 77 101 122 990 1541 ]
T [ 3083 1130 73 120 174 1002 229 7105 7329 143 3751 1882 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA2019.1 MA2019 1 HSFA1B Arabidopsis thaliana
HSF Heat
MA2019.2 MA2019 2 HSFA1B Arabidopsis thaliana
HSF Heat
     

-log(P-value) = 4274.88

TFFM details

TFFM ID: TFFM0978.1

ChIP-seq Centrality
-log(P-value): 11568.0

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0978.1

ChIP-seq Centrality
-log(P-value): 15034.4

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: