Detailed information of matrix profile MA2010.1

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Profile summary
Name: SMB
Matrix ID: MA2010.1
Class: GCM
Family: NAC
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 20935069
Uniprot ID: Q9MA17  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 1022 1139 418 3480 3246 6 8 3245 3387 869 998 ]
C [ 851 616 2165 45 251 21 3329 115 33 1004 1078 ]
G [ 488 758 553 35 25 3530 33 64 29 716 740 ]
T [ 1241 1089 466 42 80 45 232 178 153 1013 786 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA2010.1 MA2010 1 SMB Arabidopsis thaliana
NAC GCM
MA2010.2 MA2010 2 SMB Arabidopsis thaliana
NAC GCM
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0971.1

ChIP-seq Centrality
-log(P-value): 3538.13

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0971.1

ChIP-seq Centrality
-log(P-value): 3573.65

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: