Detailed information of matrix profile MA2001.1

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Profile summary
Name: Six4
Matrix ID: MA2001.1
Class: Homeo
Family: HD-SINE
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type:
Validation: 14966291
Uniprot ID: Q61321  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 859 1105 53 115 3611 345 461 147 72 1388 574 ]
C [ 686 1239 52 3906 210 114 115 62 57 779 2545 ]
G [ 1402 1112 62 146 268 3352 3506 112 99 629 471 ]
T [ 1344 835 4124 124 202 480 209 3970 4063 1495 701 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA2001.1 MA2001 1 Six4 Mus musculus
HD-SINE Homeo
MA2001.2 MA2001 2 Six4 Mus musculus
HD-SINE Homeo
     

-log(P-value) = 0.00668969

TFFM details

TFFM ID: TFFM0967.1

ChIP-seq Centrality
-log(P-value): 331.578

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0967.1

ChIP-seq Centrality
-log(P-value): 520.924

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: