Detailed information of matrix profile MA1814.1

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Profile summary
Name: RIN
Matrix ID: MA1814.1
Class: MADS
Family: Type
Collection: CORE
Taxon: Plants
Species: Solanum lycopersicum
Data Type: ChIP-seq
Validation: 18363783
Uniprot ID: Q8S4L4  
Source: 30250279
Comment:

Sequence logo

Frequency matrix

         
A [ 1509 1506 1180 524 190 4330 4309 4537 4229 4314 570 3930 637 2120 2305 ]
C [ 680 670 2029 3924 4270 143 99 50 55 98 87 85 246 719 683 ]
G [ 689 765 525 110 32 65 58 33 70 163 239 573 3258 689 576 ]
T [ 1945 1882 1089 265 331 285 357 203 469 248 3927 235 682 1295 1259 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1814.1 MA1814 1 RIN Solanum lycopersicum
Type MADS
MA1814.2 MA1814 2 RIN Solanum lycopersicum
Type MADS
     

-log(P-value) = 11.9875

TFFM details

TFFM ID: TFFM0935.1

ChIP-seq Centrality
-log(P-value): 4230.85

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0935.1

ChIP-seq Centrality
-log(P-value): 4291.9

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: