Detailed information of matrix profile MA1679.1

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Profile summary
Name: RAP2-1
Matrix ID: MA1679.1
Class: AP2/EREBP
Family: ERF/DREB
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 20230648
Uniprot ID: Q8LC30  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 244 269 343 362 49 4 45 2 4 2 9 26 226 247 215 ]
C [ 154 239 121 71 44 1 10 890 0 3 78 17 186 272 123 ]
G [ 265 137 221 237 67 892 106 2 890 890 2 810 389 114 345 ]
T [ 236 254 214 229 739 2 738 5 5 4 810 46 98 266 216 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1679.1 MA1679 1 RAP2-1 Arabidopsis thaliana
ERF/DREB AP2/EREBP
MA1679.2 MA1679 2 RAP2-1 Arabidopsis thaliana
ERF/DREB AP2/EREBP
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0689.1

ChIP-seq Centrality
-log(P-value): 733.061

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0689.1

ChIP-seq Centrality
-log(P-value): 727.33

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: