Detailed information of matrix profile MA1531.1

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Profile summary
Name: NR1D1
Matrix ID: MA1531.1
Class: Nuclear
Family: Thyroid
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 14559106
Uniprot ID: P20393  
Source: 28473536
Comment: ONLY

Sequence logo

Frequency matrix

         
A [ 1580 20 344 6595 6 1113 11 6595 301 7 4243 6595 12 723 43 ]
C [ 1809 917 89 700 6595 6595 3018 213 4428 2 2 1647 6595 6595 3362 ]
G [ 1532 4 6595 429 0 0 92 117 1241 2 6595 206 0 2 358 ]
T [ 1674 6595 1 213 8 0 3576 20 625 6595 0 0 51 16 3233 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1531.1 MA1531 1 NR1D1 Homo sapiens
Thyroid Nuclear
MA1531.2 MA1531 2 NR1D1 Homo sapiens
Thyroid Nuclear
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0865.1

ChIP-seq Centrality
-log(P-value): 2180.17

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0865.1

ChIP-seq Centrality
-log(P-value): 2210.94

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: