Detailed information of matrix profile MA1400.1

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Profile summary
Name: AT1G19000
Matrix ID: MA1400.1
Class: Tryptophan
Family: MYB-related
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID:
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 273 304 47 123 12 6 599 0 0 0 484 154 243 232 ]
C [ 86 48 319 338 33 5 0 0 599 570 1 136 28 73 ]
G [ 71 86 61 56 0 8 0 0 0 0 81 27 9 22 ]
T [ 169 161 172 82 554 580 0 599 0 29 33 282 319 272 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1400.1 MA1400 1 AT1G19000 Arabidopsis thaliana
MYB-related Tryptophan
MA1400.2 MA1400 2 AT1G19000 Arabidopsis thaliana
MYB-related Tryptophan
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0230.1

ChIP-seq Centrality
-log(P-value): 28937.6

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0230.1

ChIP-seq Centrality
-log(P-value): 28467.2

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: