Detailed information of matrix profile MA1370.1

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Profile summary
Name: IDD5
Matrix ID: MA1370.1
Class: C2H2
Family: IDD
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 24039602
Uniprot ID: Q9ZUL3  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 40 29 1 0 0 0 0 0 3 1 3 17 53 13 6 31 ]
C [ 18 4 7 2 3 0 1 160 14 5 25 4 6 57 44 14 ]
G [ 20 8 4 7 0 159 0 0 111 8 10 8 0 75 3 78 ]
T [ 82 119 148 151 157 1 159 0 32 146 122 131 101 15 107 37 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1370.1 MA1370 1 IDD5 Arabidopsis thaliana
IDD C2H2
MA1370.2 MA1370 2 IDD5 Arabidopsis thaliana
IDD C2H2
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: