Detailed information of matrix profile MA1366.1

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Profile summary
Name: DF1
Matrix ID: MA1366.1
Class: Tryptophan
Family: Trihelix
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 2255908
Uniprot ID: Q9C6K3  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 148 138 126 176 149 145 101 97 20 0 50 480 0 9 115 38 ]
C [ 55 53 100 94 141 73 32 0 8 0 14 0 480 292 39 111 ]
G [ 51 41 47 46 41 71 31 3 3 0 0 0 0 30 225 39 ]
T [ 226 248 207 164 149 191 316 380 449 480 416 0 0 149 101 292 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1366.1 MA1366 1 DF1 Arabidopsis thaliana
Trihelix Tryptophan
MA1366.2 MA1366 2 DF1 Arabidopsis thaliana
Trihelix Tryptophan
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0246.1

ChIP-seq Centrality
-log(P-value): 399.329

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0246.1

ChIP-seq Centrality
-log(P-value): 389.087

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: