Detailed information of matrix profile MA1353.1

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Profile summary
Name: AT1G72740
Matrix ID: MA1353.1
Class: Tryptophan
Family: MYB-related
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 22197883
Uniprot ID: F4IEY4  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 187 187 278 254 2 3 595 0 0 0 1 22 77 229 76 ]
C [ 94 71 23 10 107 1 0 1 0 3 28 1 33 120 82 ]
G [ 223 242 230 77 1 0 4 599 597 566 0 0 19 73 281 ]
T [ 96 100 69 259 490 596 1 0 3 31 571 577 471 178 161 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1353.1 MA1353 1 AT1G72740 Arabidopsis thaliana
MYB-related Tryptophan
MA1353.2 MA1353 2 AT1G72740 Arabidopsis thaliana
MYB-related Tryptophan
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0244.1

ChIP-seq Centrality
-log(P-value): 3732.66

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0244.1

ChIP-seq Centrality
-log(P-value): 3574.02

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: