Detailed information of matrix profile MA1346.1

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Profile summary
Name: TGA10
Matrix ID: MA1346.1
Class: Basic
Family: Group
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 8487298
Uniprot ID: E3VNM4  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 191 203 21 6 575 0 33 0 39 593 0 22 299 140 112 ]
C [ 83 98 48 48 1 587 1 3 550 0 77 473 54 107 216 ]
G [ 184 258 0 505 5 0 559 0 0 0 200 53 122 90 72 ]
T [ 135 34 524 34 12 6 0 590 4 0 316 45 118 256 193 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1346.1 MA1346 1 TGA10 Arabidopsis thaliana
Group Basic
MA1346.2 MA1346 2 TGA10 Arabidopsis thaliana
Group Basic
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0401.1

ChIP-seq Centrality
-log(P-value): 1578.41

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0401.1

ChIP-seq Centrality
-log(P-value): 1578.41

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: