Detailed information of matrix profile MA1322.2

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Profile summary
Name: SPL9
Matrix ID: MA1322.2
Class: C3H(C),C2HC
Family: SBP
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 10524240 16554053
Uniprot ID: Q700W2  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 616 479 52 21 2082 39 122 175 1596 585 646 ]
C [ 522 558 29 22 10 2027 56 51 169 461 481 ]
G [ 314 396 2010 20 7 19 1844 1710 57 396 475 ]
T [ 664 683 25 2053 17 31 94 180 294 674 514 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1322.1 MA1322 1 SPL9 Arabidopsis thaliana
SBP C3H(C),C2HC
MA1322.2 MA1322 2 SPL9 Arabidopsis thaliana
SBP C3H(C),C2HC
MA1322.3 MA1322 3 SPL9 Arabidopsis thaliana
SBP C3H(C),C2HC
     

-log(P-value) = 829.716

TFFM details

TFFM ID: TFFM0843.1

ChIP-seq Centrality
-log(P-value): 1629.17

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0843.1

ChIP-seq Centrality
-log(P-value): 1668.2

TFFM detailed summary logos

Description:

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GC Content: