Detailed information of matrix profile MA1322.1

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Profile summary
Name: SPL9
Matrix ID: MA1322.1
Class: C3H(C),C2HC
Family: SBP
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 16554053
Uniprot ID: Q700W2  
Source: 27203113
Comment: No

Sequence logo

Frequency matrix

         
A [ 233 194 210 261 0 0 599 0 381 244 123 ]
C [ 66 69 283 310 0 0 0 600 80 92 110 ]
G [ 161 90 18 28 600 3 0 0 117 104 131 ]
T [ 140 247 89 1 0 597 1 0 22 160 236 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1322.1 MA1322 1 SPL9 Arabidopsis thaliana
SBP C3H(C),C2HC
MA1322.2 MA1322 2 SPL9 Arabidopsis thaliana
SBP C3H(C),C2HC
MA1322.3 MA1322 3 SPL9 Arabidopsis thaliana
SBP C3H(C),C2HC
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0391.1

ChIP-seq Centrality
-log(P-value): 41985.3

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0391.1

ChIP-seq Centrality
-log(P-value): 41877.0

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: