Detailed information of matrix profile MA1321.1

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Profile summary
Name: SPL13A
Matrix ID: MA1321.1
Class: C3H(C),C2HC
Family: SBP
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 16554053
Uniprot ID: B9DI20  
Source: 27203113
Comment: No

Sequence logo

Frequency matrix

         
A [ 182 151 61 97 0 0 578 0 368 248 156 ]
C [ 59 10 438 460 0 0 0 578 65 90 96 ]
G [ 163 71 0 19 578 0 0 0 95 118 64 ]
T [ 174 346 79 2 0 578 0 0 50 122 262 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1321.1 MA1321 1 SPL13A Arabidopsis thaliana
SBP C3H(C),C2HC
MA1321.2 MA1321 2 SPL13A Arabidopsis thaliana
SBP C3H(C),C2HC
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0388.1

ChIP-seq Centrality
-log(P-value): 1860.81

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0388.1

ChIP-seq Centrality
-log(P-value): 1895.85

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: