Detailed information of matrix profile MA1310.1

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Profile summary
Name: WRKY42
Matrix ID: MA1310.1
Class: GCM
Family: WRKY
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 11449049
Uniprot ID: Q9XEC3  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 55 71 64 75 125 118 81 75 96 67 51 1 0 0 0 309 0 6 97 82 63 ]
C [ 73 45 34 41 72 92 88 79 51 69 184 0 0 0 0 0 309 90 38 45 48 ]
G [ 70 58 68 92 55 30 39 49 93 89 28 301 0 0 307 0 0 7 37 38 92 ]
T [ 111 135 143 101 57 69 101 106 69 84 46 7 309 309 2 0 0 206 137 144 106 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1310.1 MA1310 1 WRKY42 Arabidopsis thaliana
WRKY GCM
MA1310.2 MA1310 2 WRKY42 Arabidopsis thaliana
WRKY GCM
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: