Detailed information of matrix profile MA1266.1

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Profile summary
Name: RAP2-11
Matrix ID: MA1266.1
Class: AP2/EREBP
Family: ERF/DREB
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 9756931
Uniprot ID: Q6J9S1  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 161 28 147 0 0 0 24 83 208 163 119 232 163 171 102 ]
C [ 193 0 329 588 0 0 539 71 42 220 41 39 212 75 110 ]
G [ 132 560 112 0 588 588 0 373 323 42 342 248 82 236 270 ]
T [ 102 0 0 0 0 0 25 61 15 163 86 69 131 106 106 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1266.1 MA1266 1 RAP2-11 Arabidopsis thaliana
ERF/DREB AP2/EREBP
MA1266.2 MA1266 2 RAP2-11 Arabidopsis thaliana
ERF/DREB AP2/EREBP
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0380.1

ChIP-seq Centrality
-log(P-value): 2031.2

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0380.1

ChIP-seq Centrality
-log(P-value): 1933.84

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: