Detailed information of matrix profile MA1266.1

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Profile summary
Name: RAP2-11
Matrix ID: MA1266.1
Class: AP2/EREBP
Family: ERF/DREB
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 9756931
Uniprot ID: Q6J9S1  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 106 106 131 69 86 163 15 61 25 0 0 0 0 0 102 ]
C [ 270 236 82 248 342 42 323 373 0 588 588 0 112 560 132 ]
G [ 110 75 212 39 41 220 42 71 539 0 0 588 329 0 193 ]
T [ 102 171 163 232 119 163 208 83 24 0 0 0 147 28 161 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1266.1 MA1266 1 RAP2-11 Arabidopsis thaliana
ERF/DREB AP2/EREBP
MA1266.2 MA1266 2 RAP2-11 Arabidopsis thaliana
ERF/DREB AP2/EREBP
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0380.1

ChIP-seq Centrality
-log(P-value): 2031.2

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0380.1

ChIP-seq Centrality
-log(P-value): 1933.84

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: