Detailed information of matrix profile MA1221.1

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Profile summary
Name: RAP2-6
Matrix ID: MA1221.1
Class: AP2/EREBP
Family: ERF/DREB
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 9756931
Uniprot ID: Q7G1L2  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 82 114 175 51 67 76 11 15 22 0 0 22 18 185 337 ]
C [ 346 337 49 353 454 14 511 579 0 581 597 0 381 326 18 ]
G [ 62 32 173 47 9 310 60 3 567 15 0 574 11 22 139 ]
T [ 107 114 200 146 67 197 15 0 8 1 0 1 187 64 103 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1221.1 MA1221 1 RAP2-6 Arabidopsis thaliana
ERF/DREB AP2/EREBP
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0382.1

ChIP-seq Centrality
-log(P-value): 1337.57

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0382.1

ChIP-seq Centrality
-log(P-value): 1326.16

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: