Detailed information of matrix profile MA1221.1

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Profile summary
Name: RAP2-6
Matrix ID: MA1221.1
Class: AP2/EREBP
Family: ERF/DREB
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 9756931
Uniprot ID: Q7G1L2  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 103 64 187 1 0 1 8 0 15 197 67 146 200 114 107 ]
C [ 139 22 11 574 0 15 567 3 60 310 9 47 173 32 62 ]
G [ 18 326 381 0 597 581 0 579 511 14 454 353 49 337 346 ]
T [ 337 185 18 22 0 0 22 15 11 76 67 51 175 114 82 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1221.1 MA1221 1 RAP2-6 Arabidopsis thaliana
ERF/DREB AP2/EREBP
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0382.1

ChIP-seq Centrality
-log(P-value): 1337.57

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0382.1

ChIP-seq Centrality
-log(P-value): 1326.16

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: