Detailed information of matrix profile MA1220.1

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Profile summary
Name: TINY
Matrix ID: MA1220.1
Class: AP2/EREBP
Family: ERF/DREB
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 15319480
Uniprot ID: Q39127  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 174 170 202 113 14 0 29 0 0 0 2 100 168 209 158 ]
C [ 95 165 64 82 95 0 0 596 0 0 186 23 53 141 66 ]
G [ 173 66 127 189 2 596 33 0 596 596 0 432 320 98 226 ]
T [ 154 195 203 212 485 0 534 0 0 0 408 41 55 148 146 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1220.1 MA1220 1 TINY Arabidopsis thaliana
ERF/DREB AP2/EREBP
MA1220.2 MA1220 2 TINY Arabidopsis thaliana
ERF/DREB AP2/EREBP
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0408.1

ChIP-seq Centrality
-log(P-value): 3318.37

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0408.1

ChIP-seq Centrality
-log(P-value): 3295.27

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: