Detailed information of matrix profile MA1220.1

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Profile summary
Name: TINY
Matrix ID: MA1220.1
Class: AP2/EREBP
Family: ERF/DREB
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 15319480
Uniprot ID: Q39127  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 146 148 55 41 408 0 0 0 534 0 485 212 203 195 154 ]
C [ 226 98 320 432 0 596 596 0 33 596 2 189 127 66 173 ]
G [ 66 141 53 23 186 0 0 596 0 0 95 82 64 165 95 ]
T [ 158 209 168 100 2 0 0 0 29 0 14 113 202 170 174 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1220.1 MA1220 1 TINY Arabidopsis thaliana
ERF/DREB AP2/EREBP
MA1220.2 MA1220 2 TINY Arabidopsis thaliana
ERF/DREB AP2/EREBP
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0408.1

ChIP-seq Centrality
-log(P-value): 3318.37

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0408.1

ChIP-seq Centrality
-log(P-value): 3295.27

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: