Detailed information of matrix profile MA1215.1

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Profile summary
Name: ATHB-53
Matrix ID: MA1215.1
Class: Homeo
Family: HD-ZIP
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 11247607
Uniprot ID: Q9LVR0  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 163 108 599 599 0 563 599 0 34 130 241 ]
C [ 246 405 0 0 0 0 0 0 0 29 57 ]
G [ 66 0 0 0 0 14 0 0 34 380 146 ]
T [ 124 86 0 0 599 22 0 599 531 60 155 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1215.1 MA1215 1 ATHB-53 Arabidopsis thaliana
HD-ZIP Homeo
MA1215.2 MA1215 2 ATHB-53 Arabidopsis thaliana
HD-ZIP Homeo
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0295.1

ChIP-seq Centrality
-log(P-value): 25506.2

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0295.1

ChIP-seq Centrality
-log(P-value): 25034.5

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: