Detailed information of matrix profile MA1207.1

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Profile summary
Name: GT-3a
Matrix ID: MA1207.1
Class: Tryptophan
Family: Trihelix
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 10437822
Uniprot ID: Q9SDW0  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 145 155 11 371 0 0 0 0 54 106 183 204 259 107 130 80 91 ]
C [ 72 69 360 0 328 0 0 0 40 82 15 66 4 64 3 42 42 ]
G [ 96 98 0 0 0 371 0 324 76 57 40 14 0 4 104 36 140 ]
T [ 58 49 0 0 43 0 371 47 201 126 133 87 108 196 134 213 98 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1207.1 MA1207 1 GT-3a Arabidopsis thaliana
Trihelix Tryptophan
MA1207.2 MA1207 2 GT-3a Arabidopsis thaliana
Trihelix Tryptophan
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0348.1

ChIP-seq Centrality
-log(P-value): 1257.11

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0348.1

ChIP-seq Centrality
-log(P-value): 1250.17

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: