Detailed information of matrix profile MA1198.1

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Profile summary
Name: HAT2
Matrix ID: MA1198.1
Class: Homeo
Family: HD-ZIP
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 8253077
Uniprot ID: P46601  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 186 406 473 0 57 598 0 0 349 190 232 ]
C [ 131 36 0 0 0 0 0 0 0 112 43 ]
G [ 52 42 12 0 541 0 0 0 249 186 23 ]
T [ 229 114 113 598 0 0 598 598 0 110 300 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1198.1 MA1198 1 HAT2 Arabidopsis thaliana
HD-ZIP Homeo
MA1198.2 MA1198 2 HAT2 Arabidopsis thaliana
HD-ZIP Homeo
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0349.1

ChIP-seq Centrality
-log(P-value): 11154.9

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0349.1

ChIP-seq Centrality
-log(P-value): 10977.7

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: