Detailed information of matrix profile MA1166.1

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Profile summary
Name: PHL12
Matrix ID: MA1166.1
Class: Tryptophan
Family: GARP_G2-like
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID: Q8VYI2  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 40 19 102 105 0 104 0 5 0 0 2 5 17 14 ]
C [ 14 0 0 0 0 1 0 1 101 53 44 17 12 23 ]
G [ 44 86 0 0 22 0 0 0 0 10 16 3 9 14 ]
T [ 7 0 3 0 83 0 105 99 4 42 43 80 67 54 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1166.1 MA1166 1 PHL12 Arabidopsis thaliana
GARP_G2-like Tryptophan
MA1166.2 MA1166 2 PHL12 Arabidopsis thaliana
GARP_G2-like Tryptophan
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0686.1

ChIP-seq Centrality
-log(P-value): 4196.94

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0686.1

ChIP-seq Centrality
-log(P-value): 4164.94

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: