Detailed information of matrix profile MA1165.1

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Profile summary
Name: HHO6
Matrix ID: MA1165.1
Class: Tryptophan
Family: GARP_G2-like
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID: Q9FX84  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 436 78 90 211 317 484 0 599 0 27 0 ]
C [ 35 88 375 141 78 15 0 0 0 16 599 ]
G [ 58 4 30 98 95 35 585 0 0 0 0 ]
T [ 70 429 104 149 109 65 14 0 599 556 0 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1165.1 MA1165 1 HHO6 Arabidopsis thaliana
GARP_G2-like Tryptophan
MA1165.2 MA1165 2 HHO6 Arabidopsis thaliana
GARP_G2-like Tryptophan
MA1165.3 MA1165 3 HHO6 Arabidopsis thaliana
GARP_G2-like Tryptophan
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0238.1

ChIP-seq Centrality
-log(P-value): 8761.23

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0238.1

ChIP-seq Centrality
-log(P-value): 10010.1

TFFM detailed summary logos

Description:

Alias:

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Consensus:

Included Models:

GC Content: