Detailed information of matrix profile MA1164.1

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Profile summary
Name: HHO5
Matrix ID: MA1164.1
Class: Tryptophan
Family: GARP_G2-like
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID: F4JRB0  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 212 264 304 489 597 0 600 2 14 0 79 ]
C [ 168 99 39 19 0 0 0 0 1 600 233 ]
G [ 57 111 166 29 0 513 0 0 5 0 70 ]
T [ 163 126 91 63 3 87 0 598 580 0 218 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1164.1 MA1164 1 HHO5 Arabidopsis thaliana
GARP_G2-like Tryptophan
MA1164.2 MA1164 2 HHO5 Arabidopsis thaliana
GARP_G2-like Tryptophan
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0270.1

ChIP-seq Centrality
-log(P-value): 13419.0

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0270.1

ChIP-seq Centrality
-log(P-value): 13275.1

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: