Detailed information of matrix profile MA1159.2

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Profile summary
Name: SGR5
Matrix ID: MA1159.2
Class: C2H2
Family: IDD
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 24039602
Uniprot ID: F4IPE3  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 117 19 1 0 0 3 1 42 0 247 123 96 40 ]
C [ 21 11 0 7 1 0 566 22 92 27 44 116 160 ]
G [ 34 10 1 1 599 6 0 4 22 16 0 48 57 ]
T [ 428 560 598 592 0 591 33 532 486 310 433 340 343 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1159.1 MA1159 1 SGR5 Arabidopsis thaliana
IDD C2H2
MA1159.2 MA1159 2 SGR5 Arabidopsis thaliana
IDD C2H2
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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GC Content: