Detailed information of matrix profile MA1159.1

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Profile summary
Name: SGR5
Matrix ID: MA1159.1
Class: C2H2
Family: IDD
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 24039602
Uniprot ID: F4IPE3  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 293 343 340 433 310 486 532 33 591 0 592 598 560 428 285 ]
C [ 126 57 48 0 16 22 4 0 6 599 1 1 10 34 83 ]
G [ 40 160 116 44 27 92 22 566 0 1 7 0 11 21 43 ]
T [ 141 40 96 123 247 0 42 1 3 0 0 1 19 117 189 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1159.1 MA1159 1 SGR5 Arabidopsis thaliana
IDD C2H2
MA1159.2 MA1159 2 SGR5 Arabidopsis thaliana
IDD C2H2
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0385.1

ChIP-seq Centrality
-log(P-value): 5342.97

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0385.1

ChIP-seq Centrality
-log(P-value): 5327.28

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: