Detailed information of matrix profile MA1085.2

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Profile summary
Name: WRKY40
Matrix ID: MA1085.2
Class: GCM
Family: WRKY
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: ChIP-seq
Validation: 27203113
Uniprot ID: Q9SAH7  
Source: 28011690
Comment:

Sequence logo

Frequency matrix

         
A [ 89 107 234 0 0 0 230 232 83 76 ]
C [ 49 34 0 0 0 234 0 0 54 48 ]
G [ 34 38 0 234 0 0 0 0 46 50 ]
T [ 62 55 0 0 234 0 4 2 51 60 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1085.1 MA1085 1 WRKY40 Arabidopsis thaliana
WRKY GCM
MA1085.2 MA1085 2 WRKY40 Arabidopsis thaliana
WRKY GCM
MA1085.3 MA1085 3 WRKY40 Arabidopsis thaliana
WRKY GCM
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0619.1

ChIP-seq Centrality
-log(P-value): 725.409

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0619.1

ChIP-seq Centrality
-log(P-value): 714.972

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: