Detailed information of matrix profile MA1065.1

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Profile summary
Name: TCP20
Matrix ID: MA1065.1
Class: TCP
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: PBM
Validation: 21241251
Uniprot ID: Q9LSD5  
Source: 25215497
Comment:

Sequence logo

Frequency matrix

         
A [ 46 111 91 55 2 7 825 25 300 286 ]
C [ 30 23 356 878 997 956 61 825 338 227 ]
G [ 802 795 418 1 1 3 77 84 157 244 ]
T [ 121 71 134 66 0 34 38 67 205 244 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1065.1 MA1065 1 TCP20 Arabidopsis thaliana
TCP
MA1065.2 MA1065 2 TCP20 Arabidopsis thaliana
TCP
MA1065.3 MA1065 3 TCP20 Arabidopsis thaliana
TCP
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0395.1

ChIP-seq Centrality
-log(P-value): 2424.07

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0395.1

ChIP-seq Centrality
-log(P-value): 2759.12

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: