Detailed information of matrix profile MA1055.2

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Profile summary
Name: SPL1
Matrix ID: MA1055.2
Class: C3H(C),C2HC
Family: SBP
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 24477691 16554053
Uniprot ID: Q9SMX9  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 1061 963 1473 416 337 105 40 17 3576 54 2372 1269 1155 ]
C [ 657 748 428 77 3054 3382 11 10 19 3426 347 660 652 ]
G [ 757 736 773 216 45 50 3558 30 49 43 522 707 663 ]
T [ 1188 1216 989 2954 227 126 54 3606 19 140 422 1027 1193 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1055.1 MA1055 1 SPL1 Arabidopsis thaliana
SBP C3H(C),C2HC
MA1055.2 MA1055 2 SPL1 Arabidopsis thaliana
SBP C3H(C),C2HC
MA1055.3 MA1055 3 SPL1 Arabidopsis thaliana
SBP C3H(C),C2HC
     

-log(P-value) = 2664.07

TFFM details

TFFM ID: TFFM0816.1

ChIP-seq Centrality
-log(P-value): 5209.66

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0816.1

ChIP-seq Centrality
-log(P-value): 5317.9

TFFM detailed summary logos

Description:

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GC Content: