Detailed information of matrix profile MA1055.1

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Profile summary
Name: SPL1
Matrix ID: MA1055.1
Class: C3H(C),C2HC
Family: SBP
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: PBM
Validation: 16554053
Uniprot ID: Q9SMX9  
Source: 24477691
Comment:

Sequence logo

Frequency matrix

         
A [ 31 10 14 2 984 2 53 81 ]
C [ 880 924 2 8 6 982 13 8 ]
G [ 8 13 982 6 8 2 924 880 ]
T [ 81 53 2 984 2 14 10 31 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1055.1 MA1055 1 SPL1 Arabidopsis thaliana
SBP C3H(C),C2HC
MA1055.2 MA1055 2 SPL1 Arabidopsis thaliana
SBP C3H(C),C2HC
MA1055.3 MA1055 3 SPL1 Arabidopsis thaliana
SBP C3H(C),C2HC
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0387.1

ChIP-seq Centrality
-log(P-value): 8360.32

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0387.1

ChIP-seq Centrality
-log(P-value): 8236.5

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: