Detailed information of matrix profile MA1047.2

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Profile summary
Name: TGA5
Matrix ID: MA1047.2
Class: Basic
Family: Group
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID: Q39163  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 1135 818 648 1934 19 41 3036 4 288 28 273 2907 206 669 1121 ]
C [ 511 560 382 540 57 26 11 2802 16 23 2650 9 973 1257 530 ]
G [ 554 537 1574 474 10 2769 23 22 2804 16 140 147 612 443 603 ]
T [ 912 1197 508 164 3026 276 42 284 4 3045 49 49 1321 743 858 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1047.1 MA1047 1 TGA5 Arabidopsis thaliana
Group Basic
MA1047.2 MA1047 2 TGA5 Arabidopsis thaliana
Group Basic
MA1047.3 MA1047 3 TGA5 Arabidopsis thaliana
Group Basic
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0405.2

ChIP-seq Centrality
-log(P-value): 3077.71

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0405.2

ChIP-seq Centrality
-log(P-value): 3101.96

TFFM detailed summary logos

Description:

Alias:

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Consensus:

Included Models:

GC Content: