Detailed information of matrix profile MA0980.1

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Profile summary
Name: RAP2-10
Matrix ID: MA0980.1
Class: AP2/EREBP
Family: ERF/DREB
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: PBM
Validation: 15319480
Uniprot ID: Q9SW63  
Source: 24477691
Comment:

Sequence logo

Frequency matrix

         
A [ 33 22 117 6 4 9 8 33 ]
C [ 128 942 5 912 981 7 838 859 ]
G [ 757 14 872 78 9 952 85 16 ]
T [ 83 22 7 4 6 32 69 92 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0980.1 MA0980 1 RAP2-10 Arabidopsis thaliana
ERF/DREB AP2/EREBP
MA0980.2 MA0980 2 RAP2-10 Arabidopsis thaliana
ERF/DREB AP2/EREBP
MA0980.3 MA0980 3 RAP2-10 Arabidopsis thaliana
ERF/DREB AP2/EREBP
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0569.1

ChIP-seq Centrality
-log(P-value): 2897.92

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0569.1

ChIP-seq Centrality
-log(P-value): 2910.08

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: