Detailed information of matrix profile MA0904.2

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Profile summary
Name: HOXB5
Matrix ID: MA0904.2
Class: Homeo
Family: HOX
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 18585359
Uniprot ID: P09067  
Source: 28473536
Comment:

Sequence logo

Frequency matrix

         
A [ 450 0 3067 3067 0 0 3067 294 ]
C [ 1146 564 1061 0 0 0 0 1273 ]
G [ 1219 0 26 0 0 1031 537 1120 ]
T [ 253 3067 6 0 3067 3067 0 381 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0904.1 MA0904 1 Hoxb5 Mus musculus
HOX Homeo
MA0904.2 MA0904 2 HOXB5 Homo sapiens
HOX Homeo
MA0904.3 MA0904 3 HOXB5 Homo sapiens
HOX Homeo
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0806.1

ChIP-seq Centrality
-log(P-value): 568.852

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0806.1

ChIP-seq Centrality
-log(P-value): 659.806

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: