Detailed information of matrix profile MA0729.1

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Profile summary
Name: RARA
Matrix ID: MA0729.1
Class: Nuclear
Family: Thyroid
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 15019979
Uniprot ID: P10276  
Source: 23332764
Comment: Data

Sequence logo

Frequency matrix

         
A [ 212 328 181 0 2 546 101 1 0 37 162 0 0 559 19 0 0 4 ]
C [ 226 228 30 1 0 0 754 759 4 3 28 4 26 1 746 745 35 513 ]
G [ 115 0 36 0 705 0 0 0 5 0 0 0 707 5 0 0 1 1 ]
T [ 0 2 539 540 0 3 0 0 522 526 526 528 2 0 1 0 507 250 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0729.1 MA0729 1 RARA Homo sapiens
Thyroid Nuclear
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0571.1

ChIP-seq Centrality
-log(P-value): 1877.52

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0571.1

ChIP-seq Centrality
-log(P-value): 1998.22

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: