Detailed information of matrix profile MA0679.1

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Profile summary
Name: ONECUT1
Matrix ID: MA0679.1
Class: Homeo
Family: HD-CUT
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 8887657
Uniprot ID: Q9UBC0  
Source: 23332764
Comment:

Sequence logo

Frequency matrix

         
A [ 2949 3971 7608 7608 7608 7608 0 0 2816 7608 2 7608 4480 1438 ]
C [ 1783 788 939 487 0 1 2 7608 0 0 3 132 2837 1965 ]
G [ 1677 1707 1523 130 365 3 6 0 4792 0 0 202 792 924 ]
T [ 1200 1143 1658 1871 2 1 7608 5 2 10 7608 622 3128 3281 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0679.1 MA0679 1 ONECUT1 Homo sapiens
HD-CUT Homeo
MA0679.2 MA0679 2 ONECUT1 Homo sapiens
HD-CUT Homeo
MA0679.3 MA0679 3 ONECUT1 Homo sapiens
HD-CUT Homeo
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0196.1

ChIP-seq Centrality
-log(P-value): 30898.8

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0196.1

ChIP-seq Centrality
-log(P-value): 30919.4

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: