Detailed information of matrix profile MA0679.1

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Profile summary
Name: ONECUT1
Matrix ID: MA0679.1
Class: Homeo
Family: HD-CUT
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 8887657
Uniprot ID: Q9UBC0  
Source: 23332764
Comment:

Sequence logo

Frequency matrix

         
A [ 3281 3128 622 7608 10 2 5 7608 1 2 1871 1658 1143 1200 ]
C [ 924 792 202 0 0 4792 0 6 3 365 130 1523 1707 1677 ]
G [ 1965 2837 132 3 0 0 7608 2 1 0 487 939 788 1783 ]
T [ 1438 4480 7608 2 7608 2816 0 0 7608 7608 7608 7608 3971 2949 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0679.1 MA0679 1 ONECUT1 Homo sapiens
HD-CUT Homeo
MA0679.2 MA0679 2 ONECUT1 Homo sapiens
HD-CUT Homeo
MA0679.3 MA0679 3 ONECUT1 Homo sapiens
HD-CUT Homeo
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0196.1

ChIP-seq Centrality
-log(P-value): 30898.8

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0196.1

ChIP-seq Centrality
-log(P-value): 30919.4

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: