Detailed information of matrix profile MA0594.1

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Profile summary
Name: Hoxa9
Matrix ID: MA0594.1
Class: Homeo
Family: HOX
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: ChIP-seq
Validation: 12923056
Uniprot ID: P09631  
Source: PAZAR
Comment:

Sequence logo

Frequency matrix

         
A [ 30 11 166 0 9 5 172 0 17 45 4 ]
C [ 0 0 1 0 0 8 0 8 0 5 81 ]
G [ 11 154 0 1 6 58 0 3 117 110 53 ]
T [ 131 7 5 171 157 101 0 161 38 12 34 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0594.1 MA0594 1 Hoxa9 Mus musculus
HOX Homeo
MA0594.2 MA0594 2 HOXA9 Homo sapiens
HOX Homeo
MA0594.3 MA0594 3 HOXA9 Homo sapiens
HOX Homeo
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0179.1

ChIP-seq Centrality
-log(P-value): 800.715

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0179.1

ChIP-seq Centrality
-log(P-value): 761.749

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: