Detailed information of matrix profile MA0588.1

  1. Home
  2. Matrix > MA0588.1

Profile summary
Name: TGA1
Matrix ID: MA0588.1
Class: Basic
Family: Group
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: SELEX
Validation: 1446171
Uniprot ID: Q39237  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 2 3 11 0 0 36 0 2 1 6 11 ]
C [ 5 8 9 0 0 0 33 0 3 5 0 ]
G [ 6 16 12 0 36 0 0 34 2 6 6 ]
T [ 10 2 0 36 0 0 3 0 20 5 7 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0588.1 MA0588 1 TGA1 Arabidopsis thaliana
Group Basic
MA0588.2 MA0588 2 TGA1 Arabidopsis thaliana
Group Basic
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0400.1

ChIP-seq Centrality
-log(P-value): 12953.1

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0400.1

ChIP-seq Centrality
-log(P-value): 12947.2

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: