Detailed information of matrix profile MA0582.1

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Profile summary
Name: RAV1
Matrix ID: MA0582.1
Class: B3
Family: RAV
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: SELEX
Validation: 9862967
Uniprot ID: Q9ZWM9  
Source:
Comment: TF

Sequence logo

Frequency matrix

         
A [ 16 19 20 21 0 0 0 0 0 1 14 6 ]
C [ 17 10 4 32 0 0 3 9 0 35 10 12 ]
G [ 9 6 4 7 0 69 4 12 62 14 11 17 ]
T [ 27 34 41 9 69 0 62 47 0 7 16 14 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0582.1 MA0582 1 RAV1 Arabidopsis thaliana
RAV B3
MA0582.2 MA0582 2 RAV1 Arabidopsis thaliana
RAV B3
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0383.1

ChIP-seq Centrality
-log(P-value): 13949.1

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0383.1

ChIP-seq Centrality
-log(P-value): 13726.6

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: